JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA1732.1 E2FD Arabidopsis thaliana Fork head/winged helix factors E2F
MA1733.1 ASR3 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1733.2 ASR3 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1734.1 AT1G19040 Arabidopsis thaliana GCM domain factors NAC
MA1735.1 AT2G38300 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1735.2 AT2G38300 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1736.1 AT5G04390 Arabidopsis thaliana C2H2 zinc finger factors
MA1736.2 AT5G04390 Arabidopsis thaliana C2H2 zinc finger factors C2H2
MA1737.1 AT5G05090 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1737.2 AT5G05090 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
Showing 10 profiles of page 329 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



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Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.