JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1804.1 WIN1 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1804.2 WIN1 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1805.1 WRKY53 Arabidopsis thaliana GCM domain factors WRKY
MA1805.2 WRKY53 Arabidopsis thaliana GCM domain factors WRKY
MA1807.1 ZHD10 Arabidopsis thaliana Homeo domain factors PLINC
MA1807.2 ZHD10 Arabidopsis thaliana Homeo domain factors PLINC
MA1808.1 GLYMA-06G314400 Glycine max Basic leucine zipper factors (bZIP) Group A
MA1808.2 GLYMA-06G314400 Glycine max Basic leucine zipper factors (bZIP) Group A
MA1809.1 GLYMA-07G038400 Glycine max CH3 GRF
MA1809.2 GLYMA-07G038400 Glycine max C3H zinc finger factors GRF
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.