JASPAR CORE

  1. Home
  2. Collection core

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1810.1 GLYMA-08G357600 Glycine max B3 ABI3
MA1810.2 GLYMA-08G357600 Glycine max B3 LAV
MA1811.1 GLYMA-13G317000 Glycine max Basic leucine zipper factors (bZIP) Group A
MA1811.2 GLYMA-13G317000 Glycine max Basic leucine zipper factors (bZIP) Group A
MA1812.1 ASR1 Solanum lycopersicum Tryptophan cluster factors Myb-related
MA1812.2 ASR1 Solanum lycopersicum Tryptophan cluster factors MYB-related
MA1813.1 EIL4 Solanum lycopersicum EIL
MA1813.2 EIL4 Solanum lycopersicum EIL
MA1814.1 RIN Solanum lycopersicum MADS box factors MIKC
MA1814.2 RIN Solanum lycopersicum MADS box factors Type II
Showing 10 profiles of page 342 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.