JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1820.2 Zm00001d024324 Zea mays AP2/EREBP ERF/DREB
MA1821.1 Zm00001d020595 Zea mays AP2/EREBP ERF/DREB
MA1821.2 Zm00001d020595 Zea mays AP2/EREBP ERF/DREB
MA1822.1 Zm00001d018571 Zea mays Basic leucine zipper factors (bZIP)
MA1822.2 Zm00001d018571 Zea mays Basic leucine zipper factors (bZIP)
MA1823.1 Zm00001d027846 Zea mays Other C4 zinc finger-type factors DOF
MA1823.2 Zm00001d027846 Zea mays Other C4 zinc finger-type factors DOF
MA1824.1 Zm00001d005692 Zea mays Homeo domain factors HD-ZIP
MA1824.2 Zm00001d005692 Zea mays Homeo domain factors HD-ZIP
MA1825.1 Zm00001d044409 Zea mays Tryptophan cluster factors Myb-related
Showing 10 profiles of page 344 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.