JASPAR CORE

  1. Home
  2. Collection core

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1841.2 kn Drosophila melanogaster Rel homology region (RHR) factors EBF-related
MA1843.1 AP4 Ciona intestinalis Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA1843.2 AP4 Ciona intestinalis Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA1844.1 Atbf Ciona intestinalis Homeo domain factors HOX
MA1844.2 Atbf Ciona intestinalis Homeo domain factors HOX
MA1845.1 Atoh7 Ciona intestinalis Basic helix-loop-helix factors (bHLH) Tal-related
MA1845.2 Atoh7 Ciona intestinalis Basic helix-loop-helix factors (bHLH) Tal-related
MA1846.1 Brachyury Ciona intestinalis T-Box factors Brachyury-related factors
MA1846.2 Brachyury Ciona intestinalis T-Box factors Brachyury-related factors
MA1847.1 Bsx Ciona intestinalis Homeo domain factors NK
Showing 10 profiles of page 348 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.