JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2075.1 PK18009.1 Cannabis sativa Basic leucine zipper factors (bZIP) Group A
MA2076.1 PK18401.1 Cannabis sativa Basic helix-loop-helix factors (bHLH) bHLH
MA2077.1 PK18474.1 Cannabis sativa Basic helix-loop-helix factors (bHLH) bHLH
MA2078.1 PK19363.1 Cannabis sativa AP2/EREBP ERF/DREB
MA2079.1 PK19717.1 Cannabis sativa TCP
MA2080.1 PK20225.1 Cannabis sativa Basic helix-loop-helix factors (bHLH) bHLH
MA2081.1 PK20317.1 Cannabis sativa Other C4 zinc finger-type factors DOF
MA2082.1 PK20392.1 Cannabis sativa Homeo domain factors HD-ZIP
MA2083.1 PK21166.1 Cannabis sativa Tryptophan cluster factors MYB
MA2084.1 PK23009.1 Cannabis sativa Other C4 zinc finger-type factors DOF
Showing 10 profiles of page 390 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.