JASPAR CORE

  1. Home
  2. Collection core

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2077.1 PK18474.1 Cannabis sativa Basic helix-loop-helix factors (bHLH) bHLH
MA2078.1 PK19363.1 Cannabis sativa AP2/EREBP ERF/DREB
MA2079.1 PK19717.1 Cannabis sativa TCP
MA2080.1 PK20225.1 Cannabis sativa Basic helix-loop-helix factors (bHLH) bHLH
MA2081.1 PK20317.1 Cannabis sativa Other C4 zinc finger-type factors DOF
MA2082.1 PK20392.1 Cannabis sativa Homeo domain factors HD-ZIP
MA2083.1 PK21166.1 Cannabis sativa Tryptophan cluster factors MYB
MA2084.1 PK23009.1 Cannabis sativa Other C4 zinc finger-type factors DOF
MA2085.1 PK23763.1 Cannabis sativa Other C4 zinc finger-type factors DOF
MA2086.1 PK23964.1 Cannabis sativa Basic leucine zipper factors (bZIP) Group G
Showing 10 profiles of page 391 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.