JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2085.1 PK23763.1 Cannabis sativa Other C4 zinc finger-type factors DOF
MA2086.1 PK23964.1 Cannabis sativa Basic leucine zipper factors (bZIP) Group G
MA2087.1 PK24205.1 Cannabis sativa Basic leucine zipper factors (bZIP) Group A
MA2088.1 PK24580.1 Cannabis sativa AP2/EREBP ERF/DREB
MA2089.1 PK25870.1 Cannabis sativa GCM domain factors WRKY
MA2090.1 PK26523.1 Cannabis sativa Tryptophan cluster factors GARP_G2-like
MA2091.1 PK27109.1 Cannabis sativa Basic leucine zipper factors (bZIP) Group I
MA2092.1 PK27149.1 Cannabis sativa Basic leucine zipper factors (bZIP) Group S
MA2093.1 HOXB1 Homo sapiens Homeo domain factors HOX
MA2094.1 PAX8 Homo sapiens Paired box factors Paired domain only
Showing 10 profiles of page 391 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.