JASPAR CORE

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2107.1 cg Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2108.1 sqz Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2109.1 Arid3 Ciona intestinalis ARID ARID-related
MA2110.1 Cdx Ciona intestinalis Homeo domain factors HOX
MA2111.1 HNF4 Ciona intestinalis Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA2112.1 Meis Ciona intestinalis Homeo domain factors TALE-type homeo domain factors
MA2113.1 Pax2-5-8-a Ciona intestinalis Paired box factors Paired domain only
MA2114.1 Pax3-7-like Ciona intestinalis Paired box factors Paired plus homeo domain
MA2115.1 Pax6 Ciona intestinalis Paired box factors Paired plus homeo domain
MA2116.1 Pou4 Ciona intestinalis Homeo domain factors POU domain factors
Showing 10 profiles of page 394 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.


You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.




You can use the Newick tree from results to visualize on PhyloTree

Create random matrix models based on selected models.


Create models with permuted columns from selected models.


Download the PFMs of the model(s) selected in four different formats.