JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2125.1 Zfp809 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2126.1 Zfp961 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2127.1 atf-2 Caenorhabditis elegans Basic leucine zipper factors (bZIP) CEBP-related
MA2128.1 ceh-18 Caenorhabditis elegans Homeo domain factors POU domain factors
MA2129.1 ceh-23 Caenorhabditis elegans Homeo domain factors NK
MA2130.1 dmd-10 Caenorhabditis elegans DM-type intertwined zinc finger factors DMRT factors
MA2131.1 egl-38 Caenorhabditis elegans Paired box factors Paired domain only
MA2132.1 egrh-1 Caenorhabditis elegans C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2133.1 elt-7 Caenorhabditis elegans Other C4 zinc finger-type factors C4-GATA-related
MA2134.1 end-3 Caenorhabditis elegans Other C4 zinc finger-type factors C4-GATA-related
Showing 10 profiles of page 395 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.