JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2245.1 Hr78 Drosophila melanogaster Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA2246.1 Jra Drosophila melanogaster Basic leucine zipper factors (bZIP) Jun-related
MA2247.1 Kah Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2248.1 kay Drosophila melanogaster Basic leucine zipper factors (bZIP) Fos-related
MA2249.1 ken Drosophila melanogaster C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA2250.1 klu Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2251.1 knrl Drosophila melanogaster Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA2252.1 lmd Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2253.1 luna Drosophila melanogaster C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2254.1 lz Drosophila melanogaster Runt domain factors Runt-related factors
Showing 10 profiles of page 407 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.