JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2355.1 PK06791.1 Cannabis sativa C3H(C),C2HC zinc-fingers like factors SBP
MA2356.1 PK20555.1 Cannabis sativa Other C4 zinc finger-type factors DOF
MA2357.1 PK21687.1 Cannabis sativa Tryptophan cluster factors MYB-related
MA2358.1 PK22320.1 Cannabis sativa C3H(C),C2HC zinc-fingers like factors SBP
MA2359.1 PK23829.1 Cannabis sativa Tryptophan cluster factors MYB-related
MA2360.1 PK28565.1 Cannabis sativa Tryptophan cluster factors MYB
MA2361.1 PRUPE_ppa000682mg Prunus persica C3H(C),C2HC zinc-fingers like factors SBP
MA2362.1 TEIL Nicotiana tabacum EIL
MA2364.1 VIT_15s0048g01150 Vitis vinifera TCP
MA2365.1 VIT_17s0000g10420 Vitis vinifera Tryptophan cluster factors Trihelix
Showing 10 profiles of page 418 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.