JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2398.1 AS2 Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2399.1 LjSGA_053525.1 Lotus japonicus TCP
MA2400.1 LjTCP20 Lotus japonicus TCP
MA2401.1 Os05g0437700 Oryza sativa Basic leucine zipper factors (bZIP)
MA2402.1 OsERF104 Oryza sativa AP2/EREBP ERF/DREB
MA2403.1 DVH24_040989 Malus domestica Tryptophan cluster factors Trihelix
MA2404.1 OsTRBF3 Oryza sativa Tryptophan cluster factors MYB-related
MA2405.1 OsMSL08 Oryza sativa Tryptophan cluster factors Trihelix
MA2406.1 PK03576.1 Cannabis sativa Basic helix-loop-helix factors (bHLH) bHLH
MA2407.1 PK24978.1 Cannabis sativa Basic leucine zipper factors (bZIP) Group A
Showing 10 profiles of page 422 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.