JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2407.1 PK24978.1 Cannabis sativa Basic leucine zipper factors (bZIP) Group A
MA2408.1 BAD1 Zea mays TCP
MA2409.1 ZmbZIP25 Zea mays Basic leucine zipper factors (bZIP) D
MA2410.1 ZmbZIP54 Zea mays Basic leucine zipper factors (bZIP) S
MA2411.1 ZmbZIP57 Zea mays Basic leucine zipper factors (bZIP) S
MA2412.1 ZmbZIP72 Zea mays Basic leucine zipper factors (bZIP) S
MA2413.1 ZmbZIP96 Zea mays Basic leucine zipper factors (bZIP) D
MA2414.1 EREB127 Zea mays AP2/EREBP ERF/DREB
MA2415.1 EREB138 Zea mays AP2/EREBP ERF/DREB
MA2416.1 EREB29 Zea mays AP2/EREBP ERF/DREB
Showing 10 profiles of page 424 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.