JASPAR CORE

  1. Home
  2. Collection core

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0329.2 MBP1 Saccharomyces cerevisiae APSES-type DNA-binding domain
MA0330.1 MBP1::SWI6 Saccharomyces cerevisiae APSES-type DNA-binding domain
MA0331.1 MCM1 Saccharomyces cerevisiae MADS box factors
MA0332.1 MET28 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0333.1 MET31 Saccharomyces cerevisiae C2H2 zinc finger factors
MA0333.2 MET31 Saccharomyces cerevisiae C2H2 zinc finger factors
MA0334.1 MET32 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0334.2 MET32 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0336.1 MGA1 Saccharomyces cerevisiae Heat shock factors HSF factors
MA0336.2 MGA1 Saccharomyces cerevisiae Heat shock factors HSF factors
Showing 10 profiles of page 66 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.