JASPAR Collection UNVALIDATED

  1. Home
  2. Collection unvalidated

Total 999 profiles

These profiles are regarded as unvalidated because our curators failed to find any orthogonal support from existing literature. We encourage the community to perform experiments and/or point us to literature that our curators missed in order to support these profiles.
Display profiles
ID Name Species Class Family Sequence logo
UN0825.1 OsbZIP43 Oryza sativa Basic leucine zipper factors (bZIP) Group S
UN0826.1 AT1G18960 Arabidopsis thaliana Tryptophan cluster factors MYB-related
UN0827.1 PK06103.1 Cannabis sativa Tryptophan cluster factors MYB-related
UN0828.1 PK10342.1 Cannabis sativa Tryptophan cluster factors GARP_G2-like
UN0829.1 PK14402.1 Cannabis sativa Tryptophan cluster factors GARP_G2-like
UN0830.1 PK22848.1 Cannabis sativa CPP
UN0831.1 PRH_PETCR NA Homeo domain factors PHD
UN0832.1 ERF026 Arabidopsis thaliana AP2/EREBP ERF/DREB
UN0833.1 C3H15 Arabidopsis thaliana C3H zinc finger factors
UN0834.1 AT1G74370 Arabidopsis thaliana C3H zinc finger factors
Showing 10 profiles of page 96 from 100 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.