Detailed information of matrix profile MA0005.2

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Profile summary
Name: AG
Matrix ID: MA0005.2
Class: MADS box factors
Family: MIKC
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: SELEX
Validation: 7901838
Uniprot ID: P17839  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 21 9 10 29 0 0 31 47 52 25 17 19 7 2 22 45 40 15 ]
C [ 20 3 0 8 66 65 3 2 0 0 15 8 0 0 17 4 6 10 ]
G [ 6 3 1 8 0 0 6 0 1 1 11 20 57 54 5 5 9 16 ]
T [ 19 51 55 21 0 1 26 17 13 40 23 19 2 10 22 12 11 25 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0005.1 MA0005 1 AG Arabidopsis thaliana
MIKC MADS box factors
MA0005.2 MA0005 2 AG Arabidopsis thaliana
MIKC MADS box factors
MA0005.3 MA0005 3 AG Arabidopsis thaliana
Type II MADS box factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0437.1

ChIP-seq Centrality
-log(P-value): 525.922

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0437.1

ChIP-seq Centrality
-log(P-value): 482.967

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: