Detailed information of matrix profile MA0108.2

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Profile summary
Name: TBP
Matrix ID: MA0108.2
Class: TATA-binding proteins
Family: TBP-related factors
Collection: CORE
Taxon: Vertebrates
Species:
Data Type:
Validation: 2329577
Uniprot ID: P20226  
Source:
Comment: column 7 error fixed in version 2

Sequence logo

Frequency matrix

         
A [ 71 75 61 52 31 48 33 121 6 121 30 374 35 309 31 ]
C [ 140 139 128 128 128 150 157 44 20 0 5 2 2 18 152 ]
G [ 101 107 118 127 147 135 44 2 3 0 0 10 0 46 145 ]
T [ 77 68 82 82 83 56 155 222 360 268 354 3 352 16 61 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0108.1 MA0108 1 TBP TBP-related factors TATA-binding proteins
MA0108.2 MA0108 2 TBP TBP-related factors TATA-binding proteins
MA0108.3 MA0108 3 TBP TBP-related factors TATA-binding proteins
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0106.1

ChIP-seq Centrality
-log(P-value): 202.328

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0106.1

ChIP-seq Centrality
-log(P-value): 164.002

TFFM detailed summary logos

Description: TATA box binding protein

Alias: TFIID

Symbol: TBP

Consensus:

Included Models:

GC Content: