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Detailed information of matrix profile
MA0114.1
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Matrix > MA0114.1
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Examples:
SPI1
,
P17676
,
ChIP-seq
,
Homo sapiens
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Profile summary
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Name:
HNF4A
Matrix ID:
MA0114.1
Class:
Nuclear receptors with C4 zinc fingers
Family:
RXR-related receptors (NR2)
Collection:
CORE
Taxon:
Vertebrates
Species:
Data Type:
COMPILED
Validation:
12385991
Uniprot ID:
P41235
Source:
Comment:
Sequence logo
Download SVG
Frequency matrix
JASPAR
TRANSFAC
MEME
RAW PFM
Reverse comp.
A [
28
2
12
5
3
59
53
56
4
6
3
4
42
]
C [
7
2
4
23
51
1
2
1
4
2
22
49
7
]
G [
27
56
35
20
4
3
10
8
58
33
11
5
10
]
T [
5
7
16
19
9
4
2
2
1
26
31
9
8
]
Binding sites information
HTML file
FASTA file
External links
Version information
ChIP-seq centrality
First order TFFM
Detailed TFFM
Wordclouds
More details
Matrix ID
Base ID
Version
Name
Species
Family
Class
Sequence logo
MA0114.1
MA0114
1
HNF4A
RXR-related receptors (NR2)
Nuclear receptors with C4 zinc fingers
MA0114.2
MA0114
2
HNF4A
Homo sapiens
RXR-related receptors (NR2)
Nuclear receptors with C4 zinc fingers
MA0114.3
MA0114
3
Hnf4a
Mus musculus
RXR-related receptors (NR2)
Nuclear receptors with C4 zinc fingers
MA0114.4
MA0114
4
HNF4A
Homo sapiens
RXR-related receptors (NR2)
Nuclear receptors with C4 zinc fingers
MA0114.5
MA0114
5
HNF4A
Homo sapiens
RXR-related receptors (NR2)
Nuclear receptors with C4 zinc fingers
JASPAR
TRANSFAC
MEME
RAW PFM
×
There is no centrality information of the model.
×
TFFM first order profile doesn't exist for this profile.
×
TFFM detailed profile doesn't exist for this profile.
Description:
Alias:
Symbol:
Consensus:
Included Models:
GC Content: