Detailed information of matrix profile MA0114.3

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Profile summary
Name: Hnf4a
Matrix ID: MA0114.3
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 12385991
Uniprot ID: P49698  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 1870 1624 6 211 148 1 5162 5162 5162 0 0 129 0 4452 2148 1019 ]
C [ 587 23 0 14 66 5162 2 0 0 1 5 5162 5162 35 1109 1064 ]
G [ 3292 3538 5162 5162 564 5 159 69 52 5162 7 131 4 709 1121 906 ]
T [ 467 5 1 711 5162 122 0 11 0 3 5162 962 191 135 784 2174 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0114.1 MA0114 1 HNF4A RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
MA0114.2 MA0114 2 HNF4A Homo sapiens
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
MA0114.3 MA0114 3 Hnf4a Mus musculus
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
MA0114.4 MA0114 4 HNF4A Homo sapiens
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
MA0114.5 MA0114 5 HNF4A Homo sapiens
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0045.1

ChIP-seq Centrality
-log(P-value): 15836.8

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0045.1

ChIP-seq Centrality
-log(P-value): 15732.8

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: