Detailed information of matrix profile MA0486.2

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Profile summary
Name: HSF1
Matrix ID: MA0486.2
Class: Heat shock factors
Family: HSF factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 17500587
Uniprot ID: Q00613  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 64 11 9 4 1455 0 1455 1455 70 490 25 6 3 ]
C [ 18 4 1455 361 424 0 8 4 713 190 5 2 1455 ]
G [ 25 17 9 238 384 1455 2 4 159 592 0 4 3 ]
T [ 1455 1455 5 1455 3 0 7 27 515 183 1455 1455 4 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0486.1 MA0486 1 HSF1 Homo sapiens
HSF factors Heat shock factors
MA0486.2 MA0486 2 HSF1 Homo sapiens
HSF factors Heat shock factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0048.1

ChIP-seq Centrality
-log(P-value): 212.687

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0048.1

ChIP-seq Centrality
-log(P-value): 211.618

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: