Detailed information of matrix profile MA0509.3

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Profile summary
Name: RFX1
Matrix ID: MA0509.3
Class: Fork head/winged helix factors
Family: RFX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 28473536 28473536
Uniprot ID: P48743  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 1186 18 0 31 3217 1 1 15535 9 1408 2615 535 13432 15535 0 2565 ]
C [ 8736 1 6 719 60 12767 14060 3 20 2 33 10692 1 4 15535 6622 ]
G [ 6799 15535 3 3 12318 37 1 24 5 14127 12920 68 694 6 0 8913 ]
T [ 2641 0 15535 15535 559 2768 1475 10 15535 1 1 4843 2103 2 18 1238 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0509.1 MA0509 1 Rfx1 Mus musculus
RFX-related factors Fork head/winged helix factors
MA0509.2 MA0509 2 RFX1 Homo sapiens
RFX-related factors Fork head/winged helix factors
MA0509.3 MA0509 3 RFX1 Homo sapiens
RFX-related factors Fork head/winged helix factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0733.1

ChIP-seq Centrality
-log(P-value): 23997.1

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0733.1

ChIP-seq Centrality
-log(P-value): 24637.0

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: