Detailed information of matrix profile MA0555.1

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Profile summary
Name: SVP
Matrix ID: MA0555.1
Class: MADS box factors
Family: Type II
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-chip
Validation: 8774892
Uniprot ID: Q9FVC1  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 28 28 28 33 7 3 58 67 86 77 78 34 16 0 71 84 77 34 50 38 ]
C [ 24 11 1 16 85 79 16 5 0 1 8 10 0 0 10 2 7 8 16 21 ]
G [ 21 8 10 11 0 1 7 8 0 2 3 14 74 92 0 2 2 39 5 3 ]
T [ 19 45 53 32 0 9 11 12 6 12 3 34 2 0 11 4 6 11 21 30 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0555.1 MA0555 1 SVP Arabidopsis thaliana
Type II MADS box factors
MA0555.2 MA0555 2 SVP Arabidopsis thaliana
Type II MADS box factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0393.1

ChIP-seq Centrality
-log(P-value): 8859.18

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0393.1

ChIP-seq Centrality
-log(P-value): 8836.29

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: