Detailed information of matrix profile MA0570.1

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Profile summary
Name: ABF1
Matrix ID: MA0570.1
Class: Basic leucine zipper factors (bZIP)
Family: Group A
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: SELEX
Validation: 10636868
Uniprot ID: Q9M7Q5  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 0 8 19 0 43 0 0 0 0 0 0 17 6 13 20 12 13 10 13 ]
C [ 4 2 16 35 0 44 0 0 0 0 44 14 24 6 11 19 12 6 9 ]
G [ 32 28 0 8 1 0 44 0 44 38 0 9 9 21 11 13 17 23 20 ]
T [ 8 6 9 1 0 0 0 44 0 6 0 4 5 4 2 0 2 5 2 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0570.1 MA0570 1 ABF1 Arabidopsis thaliana
Group A Basic leucine zipper factors (bZIP)
MA0570.2 MA0570 2 ABF1 Arabidopsis thaliana
Group A Basic leucine zipper factors (bZIP)
MA0570.3 MA0570 3 ABF1 Arabidopsis thaliana
Group A Basic leucine zipper factors (bZIP)
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: