Detailed information of matrix profile MA0594.2

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Profile summary
Name: HOXA9
Matrix ID: MA0594.2
Class: Homeo domain factors
Family: HOX
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 12923056
Uniprot ID: P31269  
Source: 28473536
Comment:

Sequence logo

Frequency matrix

         
A [ 347 453 875 177 1262 1644 0 71 1644 33 ]
C [ 498 336 215 23 74 0 1644 16 145 993 ]
G [ 449 485 874 86 123 47 17 1644 534 381 ]
T [ 350 370 1644 1644 1644 0 627 77 277 651 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0594.1 MA0594 1 Hoxa9 Mus musculus
HOX Homeo domain factors
MA0594.2 MA0594 2 HOXA9 Homo sapiens
HOX Homeo domain factors
MA0594.3 MA0594 3 HOXA9 Homo sapiens
HOX Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0179.2

ChIP-seq Centrality
-log(P-value): 984.036

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0179.2

ChIP-seq Centrality
-log(P-value): 784.87

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: