Detailed information of matrix profile MA0729.1

  1. Home
  2. Matrix > MA0729.1

Profile summary
Name: RARA
Matrix ID: MA0729.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 15019979
Uniprot ID: P10276  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 250 507 0 1 0 2 528 526 526 522 0 0 3 0 540 539 2 0 ]
C [ 1 1 0 0 5 707 0 0 0 5 0 0 0 705 0 36 0 115 ]
G [ 513 35 745 746 1 26 4 28 3 4 759 754 0 0 1 30 228 226 ]
T [ 4 0 0 19 559 0 0 162 37 0 1 101 546 2 0 181 328 212 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0729.1 MA0729 1 RARA Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0571.1

ChIP-seq Centrality
-log(P-value): 1877.52

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0571.1

ChIP-seq Centrality
-log(P-value): 1998.22

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: