Detailed information of matrix profile MA1025.1

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Profile summary
Name: HBI1
Matrix ID: MA1025.1
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: PBM
Validation: 24550223
Uniprot ID: Q9ZPW3  
Source: 25215497
Comment:

Sequence logo

Frequency matrix

         
A [ 322 118 21 936 0 95 0 0 108 313 229 229 ]
C [ 226 195 936 21 1000 0 0 0 762 315 313 229 ]
G [ 226 485 21 21 0 904 0 1000 106 240 229 313 ]
T [ 226 202 21 21 0 0 1000 0 24 132 229 229 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1025.1 MA1025 1 HBI1 Arabidopsis thaliana
bHLH Basic helix-loop-helix factors (bHLH)
MA1025.2 MA1025 2 HBI1 Arabidopsis thaliana
bHLH Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

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GC Content: