Detailed information of matrix profile MA1149.1

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Profile summary
Name: RARA::RXRG
Matrix ID: MA1149.1
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: SMiLE-seq
Validation: 10698945
Uniprot ID: P10276   P48443  
Source: 28092692
Comment:

Sequence logo

Frequency matrix

         
A [ 345 496 13 11 5 18 874 272 215 211 344 348 495 26 12 60 73 702 ]
C [ 113 38 3 3 15 831 5 239 249 212 199 133 90 4 5 112 696 53 ]
G [ 413 460 954 828 71 58 111 154 320 272 231 397 390 927 815 226 97 206 ]
T [ 129 6 30 158 909 93 10 334 215 305 227 121 25 43 169 601 135 40 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1149.1 MA1149 1 RARA::RXRG Homo sapiens
Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
MA1149.2 MA1149 2 RARA::RXRG Homo sapiens
Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: