Detailed information of matrix profile MA1153.1

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Profile summary
Name: Smad4
Matrix ID: MA1153.1
Class: SMAD/NF-1 DNA-binding domain factors
Family: SMAD factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: SMiLE-seq
Validation: 15329343
Uniprot ID: P97471  
Source: 28092692
Comment:

Sequence logo

Frequency matrix

         
A [ 88 0 0 0 0 596 0 493 ]
C [ 250 0 0 1000 0 0 0 272 ]
G [ 81 1000 0 0 0 404 1000 125 ]
T [ 581 0 1000 0 1000 0 0 110 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1153.1 MA1153 1 Smad4 Mus musculus
SMAD factors SMAD/NF-1 DNA-binding domain factors
MA1153.2 MA1153 2 Smad4 Mus musculus
SMAD factors SMAD/NF-1 DNA-binding domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0151.1

ChIP-seq Centrality
-log(P-value): 576.277

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0151.1

ChIP-seq Centrality
-log(P-value): 1267.8

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: