Detailed information of matrix profile MA1210.1

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Profile summary
Name: HAT22
Matrix ID: MA1210.1
Class: Homeo domain factors
Family: HD-ZIP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-seq
Validation: 8253077
Uniprot ID: P46604  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 91 128 0 0 130 0 0 70 41 22 ]
C [ 14 1 0 5 0 0 0 0 17 21 ]
G [ 10 2 1 127 2 0 1 58 47 36 ]
T [ 17 1 131 0 0 132 131 4 27 53 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1210.1 MA1210 1 HAT22 Arabidopsis thaliana
HD-ZIP Homeo domain factors
MA1210.2 MA1210 2 HAT22 Arabidopsis thaliana
HD-ZIP Homeo domain factors
MA1210.3 MA1210 3 HAT22 Arabidopsis thaliana
HD-ZIP Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0498.1

ChIP-seq Centrality
-log(P-value): 2944.01

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0498.1

ChIP-seq Centrality
-log(P-value): 2869.18

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: