Detailed information of matrix profile MA1390.1

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Profile summary
Name: HHO2
Matrix ID: MA1390.1
Class: Tryptophan cluster factors
Family: GARP_G2-like
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q8VZS3  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 0 460 579 0 87 50 112 143 102 451 106 127 54 ]
C [ 0 26 0 0 504 51 81 128 25 17 46 129 401 ]
G [ 595 51 4 2 3 10 91 128 383 88 7 48 35 ]
T [ 5 63 17 598 6 489 316 201 90 44 441 296 110 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1390.1 MA1390 1 HHO2 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1390.2 MA1390 2 HHO2 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1390.3 MA1390 3 HHO2 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0240.1

ChIP-seq Centrality
-log(P-value): 8656.37

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0240.1

ChIP-seq Centrality
-log(P-value): 9479.8

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: