Detailed information of matrix profile MA1390.2

  1. Home
  2. Matrix > MA1390.2

Profile summary
Name: HHO2
Matrix ID: MA1390.2
Class: Tryptophan cluster factors
Family: GARP_G2-like
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 25215497
Uniprot ID: Q8VZS3  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 505 503 599 349 304 4 1446 1496 8 171 49 239 394 435 ]
C [ 299 249 258 291 119 1 14 3 16 1350 22 123 435 237 ]
G [ 237 280 238 181 960 1518 23 2 4 7 14 130 240 471 ]
T [ 497 506 443 717 155 15 55 37 1510 10 1453 1046 469 395 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1390.1 MA1390 1 HHO2 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1390.2 MA1390 2 HHO2 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1390.3 MA1390 3 HHO2 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
     

-log(P-value) = 811.032

TFFM details

TFFM ID: TFFM0849.1

ChIP-seq Centrality
-log(P-value): 734.56

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0849.1

ChIP-seq Centrality
-log(P-value): 766.676

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: