Detailed information of matrix profile UN0130.1

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Profile summary

Name: IRX3
Matrix ID: UN0130.1
Class: Homeo domain factors
Family: TALE-type homeo domain factors
Collection: UNVALIDATED
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation:
Uniprot ID: P78415  
Source: 28473536
Comment: not supported by literature (PMID:22923612 consensus = ACAnnTGT)

Sequence logo

Frequency matrix

         
A [ 3566 12686 22 12686 4491 2021 5840 5670 5606 5964 5207 2773 306 12686 4 154 34 6765 ]
C [ 15 74 12686 0 6050 1342 2056 845 481 461 882 1858 12686 28 2 1 0 2284 ]
G [ 2303 0 5 2 24 12686 1832 916 427 472 791 2038 1454 6163 0 12686 73 2 ]
T [ 6804 32 145 0 12686 370 2958 5255 6173 5789 5806 6019 2319 4569 12686 18 12686 3636 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0130.1 UN0130 1 IRX3 Homo sapiens
TALE-type homeo domain factors Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

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GC Content: