JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA1411.1 TSAR1 Medicago truncatula Basic helix-loop-helix factors (bHLH)
MA1411.2 TSAR1 Medicago truncatula Basic helix-loop-helix factors (bHLH) bHLH
MA1412.1 TSAR2 Medicago truncatula Basic helix-loop-helix factors (bHLH)
MA1412.2 TSAR2 Medicago truncatula Basic helix-loop-helix factors (bHLH) bHLH
MA1414.1 E2FA Arabidopsis thaliana Fork head/winged helix factors E2F
MA1414.2 E2FA Arabidopsis thaliana Fork head/winged helix factors E2F
MA1415.1 REF6 Arabidopsis thaliana C2H2 zinc finger factors
MA1415.2 REF6 Arabidopsis thaliana C2H2 zinc finger factors Jumonji
MA1416.1 RAMOSA1 Zea mays C2H2 zinc finger factors C2H2
MA1417.1 O2 Zea mays Basic leucine zipper factors (bZIP) Group C
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.