Detailed information of matrix profile MA1415.1

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Profile summary
Name: REF6
Matrix ID: MA1415.1
Class: C2H2 zinc finger factors
Family: Jumonji
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-seq
Validation: 27111034
Uniprot ID: Q9STM3  
Source: 27111035
Comment:

Sequence logo

Frequency matrix

         
A [ 1983 2634 3458 3511 1 3622 6 3533 45 752 2249 ]
C [ 209 137 27 34 3661 25 21 21 10 1063 473 ]
G [ 1144 577 24 118 1 30 3625 105 3581 884 441 ]
T [ 351 339 178 24 24 10 35 28 51 988 524 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1415.1 MA1415 1 REF6 Arabidopsis thaliana
Jumonji C2H2 zinc finger factors
MA1415.2 MA1415 2 REF6 Arabidopsis thaliana
Jumonji C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0574.1

ChIP-seq Centrality
-log(P-value): 2618.38

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0574.1

ChIP-seq Centrality
-log(P-value): 2530.55

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: