Detailed information of matrix profile MA0139.1

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Profile summary
Name: CTCF
Matrix ID: MA0139.1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 17512414
Uniprot ID: P49711  
Source:
Comment: TF has several motif variants.

Sequence logo

Frequency matrix

         
A [ 87 167 281 56 8 744 40 107 851 5 333 54 12 56 104 372 82 117 402 ]
C [ 291 145 49 800 903 13 528 433 11 0 3 12 0 8 733 13 482 322 181 ]
G [ 76 414 449 21 0 65 334 48 32 903 566 504 890 775 5 507 307 73 266 ]
T [ 459 187 134 36 2 91 11 324 18 3 9 341 8 71 67 17 37 396 59 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0139.1 MA0139 1 CTCF Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
MA0139.2 MA0139 2 CTCF Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0014.1

ChIP-seq Centrality
-log(P-value): 87772.8

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0014.1

ChIP-seq Centrality
-log(P-value): 86597.0

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: