Detailed information of matrix profile MA0139.2

  1. Home
  2. Matrix > MA0139.2

Profile summary
Name: CTCF
Matrix ID: MA0139.2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 17512414
Uniprot ID: P49711  
Source:
Comment: TF has several motif variants.

Sequence logo

Frequency matrix

         
A [ 281 56 8 744 40 107 851 5 333 54 12 56 104 372 82 ]
C [ 49 800 903 13 528 433 11 0 3 12 0 8 733 13 482 ]
G [ 449 21 0 65 334 48 32 903 566 504 890 775 5 507 307 ]
T [ 134 36 2 91 11 324 18 3 9 341 8 71 67 17 37 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0139.1 MA0139 1 CTCF Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
MA0139.2 MA0139 2 CTCF Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: