Detailed information of matrix profile MA0148.3

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Profile summary
Name: FOXA1
Matrix ID: MA0148.3
Class: Fork head/winged helix factors
Family: FOX
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 18798982
Uniprot ID: P55317  
Source: PAZAR
Comment:

Sequence logo

Frequency matrix

         
A [ 4328 4659 3062 7135 70 5883 0 0 0 18252 0 9193 827 10702 4807 ]
C [ 4827 6851 8558 4317 0 0 0 0 0 0 20556 2655 7296 1 2603 ]
G [ 4124 4731 5314 3641 12 16125 0 1292 2859 3756 0 0 1392 63 9415 ]
T [ 8729 5767 5074 6915 21926 0 22008 20716 19149 0 1452 10160 12493 11242 5183 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0148.1 MA0148 1 FOXA1 Homo sapiens
FOX Fork head/winged helix factors
MA0148.2 MA0148 2 FOXA1 Homo sapiens
FOX Fork head/winged helix factors
MA0148.3 MA0148 3 FOXA1 Homo sapiens
FOX Fork head/winged helix factors
MA0148.4 MA0148 4 FOXA1 Homo sapiens
FOX Fork head/winged helix factors
MA0148.5 MA0148 5 FOXA1 Homo sapiens
FOX Fork head/winged helix factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0035.1

ChIP-seq Centrality
-log(P-value): 28445.6

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0035.1

ChIP-seq Centrality
-log(P-value): 28572.2

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: