Detailed information of matrix profile MA0499.1

  1. Home
  2. Matrix > MA0499.1

Profile summary
Name: Myod1
Matrix ID: MA0499.1
Class: Basic helix-loop-helix factors (bHLH)
Family: MyoD/ASC-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 20412780
Uniprot ID: P10085  
Source: ENCODE
Comment:

Sequence logo

Frequency matrix

         
A [ 6862 4142 0 24353 0 0 0 0 9 16 5861 1913 4129 ]
C [ 5589 6513 24514 0 6423 24514 0 0 9087 11010 7591 11622 7657 ]
G [ 5003 11000 0 0 18072 0 0 24514 654 2905 5945 4319 4423 ]
T [ 7060 2859 0 161 19 0 24514 0 14764 10583 5117 6660 8305 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0499.1 MA0499 1 Myod1 Mus musculus
MyoD/ASC-related factors Basic helix-loop-helix factors (bHLH)
MA0499.2 MA0499 2 MYOD1 Homo sapiens
MyoD/ASC-related factors Basic helix-loop-helix factors (bHLH)
MA0499.3 MA0499 3 MYOD1 Homo sapiens
MyoD/ASC-related factors Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0068.1

ChIP-seq Centrality
-log(P-value): 22973.6

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0068.1

ChIP-seq Centrality
-log(P-value): 22904.2

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: