Detailed information of matrix profile MA0682.1

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Profile summary
Name: Pitx1
Matrix ID: MA0682.1
Class: Homeo domain factors
Family: Paired-related HD factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: HT-SELEX
Validation: 8675014
Uniprot ID: P70314  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 600 162 3116 3116 70 222 164 711 ]
C [ 842 23 155 0 59 3116 3116 1275 ]
G [ 338 0 210 0 467 42 138 430 ]
T [ 1335 3116 49 17 3116 235 612 700 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0682.1 MA0682 1 Pitx1 Mus musculus
Paired-related HD factors Homeo domain factors
MA0682.2 MA0682 2 PITX1 Homo sapiens
Paired-related HD factors Homeo domain factors
MA0682.3 MA0682 3 PITX1 Homo sapiens
Paired-related HD factors Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: