Detailed information of matrix profile MA1207.1

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Profile summary
Name: GT-3a
Matrix ID: MA1207.1
Class: Tryptophan cluster factors
Family: Trihelix
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 10437822
Uniprot ID: Q9SDW0  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 98 213 134 196 108 87 133 126 201 47 371 0 43 0 0 49 58 ]
C [ 140 36 104 4 0 14 40 57 76 324 0 371 0 0 0 98 96 ]
G [ 42 42 3 64 4 66 15 82 40 0 0 0 328 0 360 69 72 ]
T [ 91 80 130 107 259 204 183 106 54 0 0 0 0 371 11 155 145 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1207.1 MA1207 1 GT-3a Arabidopsis thaliana
Trihelix Tryptophan cluster factors
MA1207.2 MA1207 2 GT-3a Arabidopsis thaliana
Trihelix Tryptophan cluster factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0348.1

ChIP-seq Centrality
-log(P-value): 1257.11

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0348.1

ChIP-seq Centrality
-log(P-value): 1250.17

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: