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1526 profile(s) found

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ID Name Species Class Family Logo
MA0020.1 Dof2 Zea mays
 Other C4 zinc finger-type factors DOF
MA0020.2 Dof2 Zea mays
 Other C4 zinc finger-type factors DOF
MA0021.1 Dof3 Zea mays
 Other C4 zinc finger-type factors DOF
MA0034.1 Gam1 Hordeum vulgare
 Tryptophan cluster factors MYB
MA0034.2 Gam1 Hordeum vulgare
 Tryptophan cluster factors MYB
MA0053.1 MNB1A Zea mays
 Other C4 zinc finger-type factors DOF
MA0054.1 myb.Ph3 Petunia x hybrida
 Tryptophan cluster factors MYB
MA0064.1 PBF Zea mays
 Other C4 zinc finger-type factors DOF
MA0082.1 squamosa Antirrhinum majus
 MADS box factors Type II
MA0082.2 squamosa Antirrhinum majus
 MADS box factors Type II
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.