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647 profile(s) found

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ID Name Species Class Family Logo
MA0018.4 CREB1 Homo sapiens
 Basic leucine zipper factors (bZIP) CREB-related factors
MA0018.5 CREB1 Homo sapiens
 Basic leucine zipper factors (bZIP) CREB-related factors
MA0024.2 E2F1 Homo sapiens
 Fork head/winged helix factors E2F
MA0025.2 NFIL3 Homo sapiens
 Basic leucine zipper factors (bZIP) CEBP-related
MA0025.3 NFIL3 Homo sapiens
 Basic leucine zipper factors (bZIP) CEBP-related
MA0035.2 Gata1 Mus musculus
 Other C4 zinc finger-type factors C4-GATA-related
MA0035.3 Gata1 Mus musculus
 Other C4 zinc finger-type factors C4-GATA-related
MA0035.4 GATA1 Homo sapiens
 Other C4 zinc finger-type factors C4-GATA-related
MA0035.5 GATA1 Homo sapiens
 Other C4 zinc finger-type factors C4-GATA-related
MA0036.2 GATA2 Homo sapiens
 Other C4 zinc finger-type factors C4-GATA-related
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.