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1526 profile(s) found

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ID Name Species Class Family Logo
MA0096.1 bZIP910 Antirrhinum majus
 Basic leucine zipper factors (bZIP) Group S
MA0097.1 bZIP911 Antirrhinum majus
 Basic leucine zipper factors (bZIP) Group S
MA0110.1 ATHB-5 Arabidopsis thaliana
 Homeo domain factors HD-ZIP
MA0110.2 ATHB-5 Arabidopsis thaliana
 Homeo domain factors HD-ZIP
MA0110.3 ATHB-5 Arabidopsis thaliana
 Homeo domain factors HD-ZIP
MA0110.4 ATHB-5 Arabidopsis thaliana
 Homeo domain factors HD-ZIP
MA0121.1 ARR10 Arabidopsis thaliana
 Tryptophan cluster factors GARP_ARR-B
MA0121.2 ARR10 Arabidopsis thaliana
 Tryptophan cluster factors GARP_ARR-B
MA0123.1 abi4 Zea mays
 AP2/EREBP ERF/DREB
MA0128.1 EmBP-1 Triticum aestivum
 Basic leucine zipper factors (bZIP) Group G
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.