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129 profile(s) found

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ID Name Species Class Family Logo
MA0923.1 lim-4 Caenorhabditis elegans
 C2H2 zinc finger factors HD-LIM
MA0923.2 lim-4 Caenorhabditis elegans
 C2H2 zinc finger factors HD-LIM
MA0924.1 pal-1 Caenorhabditis elegans
 Homeo domain factors HOX
MA0925.1 sma-4 Caenorhabditis elegans
 SMAD/NF-1 DNA-binding domain factors SMAD factors
MA0925.2 sma-4 Caenorhabditis elegans
 SMAD/NF-1 DNA-binding domain factors SMAD factors
MA0926.1 unc-86 Caenorhabditis elegans
 Homeo domain factors POU domain factors
MA0927.1 vab-7 Caenorhabditis elegans
 Homeo domain factors HOX
MA0928.1 zfh-2 Caenorhabditis elegans
 Homeo domain factors HD-ZF factors
MA0928.2 zfh-2 Caenorhabditis elegans
 Homeo domain factors HD-ZF factors
MA1438.1 atf-7 Caenorhabditis briggsae
 Basic leucine zipper factors (bZIP) Jun-related
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.