Search profile(s)

  1. Home
  2. Search

647 profile(s) found

Display profiles
ID Name Species Class Family Logo
MA0060.3 NFYA Homo sapiens
 Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
MA0060.4 NFYA Homo sapiens
 Heteromeric CCAAT-binding factors Heteromeric CCAAT-binding
MA0062.2 Gabpa Mus musculus
 Tryptophan cluster factors Ets-related
MA0062.3 GABPA Homo sapiens
 Tryptophan cluster factors Ets-related
MA0062.4 GABPA Homo sapiens
 Tryptophan cluster factors Ets-related
MA0063.2 NKX2-5 Homo sapiens
 Homeo domain factors NK
MA0063.3 NKX2-5 Homo sapiens
 Homeo domain factors NK
MA0065.2 Pparg::Rxra Mus musculus
 Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
MA0065.3 Pparg::Rxra Mus musculus
 Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
MA0076.2 ELK4 Homo sapiens
 Tryptophan cluster factors Ets-related
Showing 10 profiles of page 5 from 65 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.