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357 profile(s) found

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ID Name Species Class Family Logo
MA0188.1 Dr Drosophila melanogaster
 Homeo domain factors NK
MA0189.1 E5 Drosophila melanogaster
 Homeo domain factors NK
MA0189.2 E5 Drosophila melanogaster
 Homeo domain factors NK
MA0190.1 Gsc Drosophila melanogaster
 Homeo domain factors Paired-related HD factors
MA0191.1 HGTX Drosophila melanogaster
 Homeo domain factors NK
MA0192.1 Hmx Drosophila melanogaster
 Homeo domain factors NK
MA0193.1 schlank Drosophila melanogaster
 Homeo domain factors
MA0194.1 Lim1 Drosophila melanogaster
 Homeo domain factors HD-LIM
MA0195.1 Lim3 Drosophila melanogaster
 Homeo domain factors HD-LIM
MA0195.2 Lim3 Drosophila melanogaster
 Homeo domain factors HD-LIM
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.