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1526 profile(s) found

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ID Name Species Class Family Logo
MA0557.2 FHY3 Arabidopsis thaliana
 GCM domain factors FRS/FRF
MA0558.1 FLC Arabidopsis thaliana
 MADS box factors Type II
MA0558.2 FLC Arabidopsis thaliana
 MADS box factors Type II
MA0559.1 PI Arabidopsis thaliana
 MADS box factors Type II
MA0560.1 PIF3 Arabidopsis thaliana
 Basic helix-loop-helix factors (bHLH) bHLH
MA0560.2 PIF3 Arabidopsis thaliana
 Basic helix-loop-helix factors (bHLH) bHLH
MA0561.1 PIF4 Arabidopsis thaliana
 Basic helix-loop-helix factors (bHLH) bHLH
MA0562.1 PIF5 Arabidopsis thaliana
 Basic helix-loop-helix factors (bHLH) bHLH
MA0563.1 SEP3 Arabidopsis thaliana
 MADS box factors Type II
MA0563.2 SEP3 Arabidopsis thaliana
 MADS box factors Type II
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.