Search profile(s)

  1. Home
  2. Search

647 profile(s) found

Display profiles
ID Name Species Class Family Logo
MA0076.3 ELK4 Homo sapiens
 Tryptophan cluster factors Ets-related
MA0079.3 SP1 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0079.5 SP1 Homo sapiens
 C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0080.3 Spi1 Mus musculus
 Tryptophan cluster factors Ets-related
MA0080.5 SPI1 Homo sapiens
 Tryptophan cluster factors Ets-related
MA0081.2 SPIB Homo sapiens
 Tryptophan cluster factors Ets-related
MA0081.3 SPIB Homo sapiens
 Tryptophan cluster factors Ets-related
MA0083.2 SRF Homo sapiens
 MADS box factors Responders to external signals (SRF/RLM1)
MA0088.3 ZNF143 Homo sapiens
 C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0089.2 MAFG::NRF1 Homo sapiens
 Basic leucine zipper factors (bZIP)::Uncharacterized Maf-related::NRF
Showing 10 profiles of page 6 from 65 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.