JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA0803.1 TBX15 Homo sapiens T-Box factors TBX1-related factors
MA0804.1 TBX19 Homo sapiens T-Box factors Brachyury-related factors
MA0804.2 TBX19 Homo sapiens T-Box factors Brachyury-related factors
MA0805.1 TBX1 Homo sapiens T-Box factors TBX1-related factors
MA0806.1 TBX4 Homo sapiens T-Box factors TBX2-related factors
MA0807.1 TBX5 Homo sapiens T-Box factors TBX2-related factors
MA0808.1 TEAD3 Homo sapiens TEA domain factors TEF-1-related factors
MA0809.1 TEAD4 Homo sapiens TEA domain factors TEF-1-related factors
MA0809.2 TEAD4 Homo sapiens TEA domain factors TEF-1-related factors
MA0809.3 TEAD4 Homo sapiens TEA domain factors TEF-1-related factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.