JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0890.1 GBX2 Homo sapiens Homeo domain factors HOX
MA0890.2 GBX2 Homo sapiens Homeo domain factors HOX
MA0891.1 GSC2 Homo sapiens Homeo domain factors Paired-related HD factors
MA0891.2 GSC2 Homo sapiens Homeo domain factors Paired-related HD factors
MA0892.1 GSX1 Homo sapiens Homeo domain factors HOX
MA0892.2 GSX1 Homo sapiens Homeo domain factors HOX
MA0893.1 GSX2 Homo sapiens Homeo domain factors HOX
MA0893.2 GSX2 Homo sapiens Homeo domain factors HOX
MA0893.3 GSX2 Homo sapiens Homeo domain factors HOX
MA0894.1 HESX1 Homo sapiens Homeo domain factors Paired-related HD factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.